Research

 

Publications

1. Kim S, Kang I, Lee J-W, Jeon CO, Giovannoni SJ, Cho J-C, Heme auxotrophy in abundant
aquatic microbial lineages, Proc. Natl. Acad. Sci. U. S. A., 118, 47, e2102750118, 2021

2. Kim S, Islam MR, Kang I, Cho J-C, Cultivation of dominant freshwater bacterioplankton lineages
using a high-throughput dilution-to-extinction culturing approach over a one-year period, Front.
Microbiol., 12, 700637, 2021

3. Kim S, Park MS, Song J, Kang I, Cho J-C, High-throughput cultivation based on dilution-to-
extinction with catalase supplementation and a case study of cultivating acI bacteria from Lake
Soyang, J. Microbiol. 58, 11, pp.893-905, 2020

4. Moon K, Kim S, Kang I, Cho J-C, Viral metagenomes of Lake Soyang, the largest freshwater
lake in South Korea. Sci. Data, 7, 349, 2020

5. Kim S, Kang I, Seo JH, Cho J-C, Culturing the ubiquitous freshwater actinobacterial acI lineage
by supplying a biochemical ‘helper’ catalase, ISME J, 13, 9, pp.2252-2263, 2019

6. Park M, Song J, Nam GG, Kim S, Joung Y, Cho J-C, Flavobacterium lacicola sp. nov., isolated
from a freshwater lake. Int J Syst Evol Microbiol., 68, 5, pp.1565-1570, 2018

7. Moon K, Kang I, Kim S, Kim SJ, Cho J-C, Genomic and ecological study of two distinctive
freshwater bacteriophages infecting a Comamonadaceae bacterium, Sci Rep, 22, 8, 1, pp.7989,
2018

8. Park M, Nam GG, Kim S, Jeon HT, Joung Y, Cho J-C, Flavobacterium chuncheonense sp. nov.
and Flavobacterium luteum sp. nov., isolated from a freshwater lake, Int J Syst Evol Microbiol,
67, 11, pp.4409-4415, 2017

9. Moon K, Kang I, Kim S, Kim SJ, Cho J-C, Genome characteristics and environmental
distribution of the first phage that infects the LD28 clade, a freshwater methylotrophic bacterial
group, Environ Microbiol, 19, 11, pp4714-4727, 2017

10. Nam GG, Joung Y, Park M, Kim S, Jeon HT, Cho J-C, Flavobacterium soyangense sp. nov., a
psychrotolerant bacterium, isolated from an oligotrophic freshwater lake, Int J Syst Evol
Microbiol, 67, 7, pp.2440-2445, 2017

11. Park M, Joung Y, Nam GG, Kim S, Cho J-C, Flavobacterium inkyongense sp. nov., isolated from
an artificial freshwater pond, Int J Syst Evol Microbiol, 67, 1, pp.82-86, 2017

12. Kang I, Kim S, Islam R, Cho J-C, The first complete genome sequences of the acI lineage, the
most abundant freshwater Actinobacteria, obtained by whole-genome-amplification of dilution-
to-extinction cultures, Sci. Rep, 7, 42252, 2017

13. Kim S, Kang I, Cho J-C, Genomic Analysis of a Freshwater Actinobacterium, “Candidatus
Limnosphaera aquatica” Strain IMCC26207, Isolated from Lake Soyang, J Microbiol Biotechnol,
28, 27, 4, pp.825-833, 2017

14. Moon K, Kang I, Kim S, Cho J-C, Kim S-J, Complete genome sequence of bacteriophage P26218
infecting Rhodoferax sp. strain IMCC26218, Stand. Genomic Sci, 10, 111, 2015

My favorite words

 

Contact

e-mail: shkim@* (* –> scl.kyoto-u.ac.jp)
tel: +81-774-38-3273